J4_6CFL_015

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFL_015 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.075

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6CFL|1|2A|C|297
6CFL|1|2A|G|298
6CFL|1|2A|A|299
6CFL|1|2A|A|300
6CFL|1|2A|G|301
*
6CFL|1|2A|C|316
6CFL|1|2A|G|317
6CFL|1|2A|C|318
6CFL|1|2A|C|319
*
6CFL|1|2A|G|323
6CFL|1|2A|A|324
6CFL|1|2A|G|325
*
6CFL|1|2A|C|337
6CFL|1|2A|G|338
6CFL|1|2A|U|339
6CFL|1|2A|A|340
6CFL|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S Ribosomal Protein L24