J4_6CHR_001

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAAUGC*GAUAG*UAA*UG

Length

17 nucleotides

Bulged bases

6CHR|1|A|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CHR|1|A|C|435
6CHR|1|A|A|436
6CHR|1|A|A|437
6CHR|1|A|A|438
6CHR|1|A|U|439
6CHR|1|A|G|440
6CHR|1|A|C|441
*
6CHR|1|A|G|459
6CHR|1|A|A|460
6CHR|1|A|U|461
6CHR|1|A|A|462
6CHR|1|A|G|463
*
6CHR|1|A|U|476
6CHR|1|A|A|477
6CHR|1|A|A|478
*
6CHR|1|A|U|489
6CHR|1|A|G|490

Current chains

Chain A

RNA (621-MER)

Nearby chains