J4_6CZR_002

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1134

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6CZR|1|1A|C|320
6CZR|1|1A|G|321
6CZR|1|1A|A|322
6CZR|1|1A|A|323
6CZR|1|1A|G|324
*
6CZR|1|1A|C|339
6CZR|1|1A|G|340
6CZR|1|1A|C|341
6CZR|1|1A|C|342
*
6CZR|1|1A|G|346
6CZR|1|1A|A|347
6CZR|1|1A|G|348
*
6CZR|1|1A|C|360
6CZR|1|1A|G|361
6CZR|1|1A|U|362
6CZR|1|1A|A|363
6CZR|1|1A|G|364

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24