J4_6CZR_015

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAUAAA*UCG*CGCGC*GG

Length

17 nucleotides

Bulged bases

6CZR|1|2A|G|1316, 6CZR|1|2A|A|1317, 6CZR|1|2A|U|1318, 6CZR|1|2A|A|1320, 6CZR|1|2A|C|1692, 6CZR|1|2A|G|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CZR|1|2A|C|1315
6CZR|1|2A|G|1316
6CZR|1|2A|A|1317
6CZR|1|2A|U|1318
6CZR|1|2A|A|1319
6CZR|1|2A|A|1320
6CZR|1|2A|A|1321
*
6CZR|1|2A|U|1339
6CZR|1|2A|C|1340
6CZR|1|2A|G|1341
*
6CZR|1|2A|C|1690
6CZR|1|2A|G|1691
6CZR|1|2A|C|1692
6CZR|1|2A|G|1693
6CZR|1|2A|C|1694
*
6CZR|1|2A|G|2030
6CZR|1|2A|G|2031

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22