J4_6CZR_018

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6CZR|1|2A|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_018 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2209

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CZR|1|2A|G|1489
6CZR|1|2A|A|1490
6CZR|1|2A|C|1491
*
6CZR|1|2A|G|1512
6CZR|1|2A|C|1513
*
6CZR|1|2A|G|1570
6CZR|1|2A|G|1571
*
6CZR|1|2A|C|1592
6CZR|1|2A|C|1593

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains