J4_6CZR_020

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6CZR|1|2A|A|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_020 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0911

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|2A|U|1863
6CZR|1|2A|U|1864
6CZR|1|2A|G|1865
*
6CZR|1|2A|C|1926
6CZR|1|2A|G|1927
*
6CZR|1|2A|C|1945
6CZR|1|2A|C|1946
6CZR|1|2A|U|1947
6CZR|1|2A|A|1948
6CZR|1|2A|A|1949
6CZR|1|2A|G|1950
6CZR|1|2A|G|1951
6CZR|1|2A|U|1952
6CZR|1|2A|A|1953
6CZR|1|2A|G|1954
*
6CZR|1|2A|C|1988
6CZR|1|2A|G|1989
6CZR|1|2A|A|1990
6CZR|1|2A|A|1991
6CZR|1|2A|A|1992
6CZR|1|2A|A|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA