J4_6DDD_004
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 6DDD|1|1|G|1309, 6DDD|1|1|A|1310, 6DDD|1|1|G|1691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DDD_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.0841
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DDD|1|1|C|1308
6DDD|1|1|G|1309
6DDD|1|1|A|1310
6DDD|1|1|A|1311
6DDD|1|1|A|1312
6DDD|1|1|G|1313
*
6DDD|1|1|C|1331
6DDD|1|1|C|1332
*
6DDD|1|1|G|1689
6DDD|1|1|A|1690
6DDD|1|1|G|1691
6DDD|1|1|C|1692
*
6DDD|1|1|G|2036
6DDD|1|1|G|2037
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L22
- Chain N
- 50S ribosomal protein L32
- Chain Z
- 50S ribosomal protein L17
Coloring options: