J4_6DDD_005

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6DDD|1|1|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|G|1347
6DDD|1|1|U|1348
6DDD|1|1|U|1349
6DDD|1|1|U|1350
6DDD|1|1|C|1351
*
6DDD|1|1|G|1375
6DDD|1|1|G|1376
6DDD|1|1|U|1377
6DDD|1|1|U|1378
6DDD|1|1|A|1379
6DDD|1|1|G|1380
*
6DDD|1|1|C|1441
6DDD|1|1|C|1442
*
6DDD|1|1|G|1641
6DDD|1|1|C|1642
6DDD|1|1|C|1643
6DDD|1|1|C|1644
6DDD|1|1|G|1645
6DDD|1|1|U|1646
6DDD|1|1|A|1647
6DDD|1|1|C|1648

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23

Chain P

50S ribosomal protein L34