J4_6DDD_006

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGCG*CACGU*GGAGAA*UCGAGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|A|1488
6DDD|1|1|A|1489
6DDD|1|1|G|1490
6DDD|1|1|C|1491
6DDD|1|1|G|1492
*
6DDD|1|1|C|1506
6DDD|1|1|A|1507
6DDD|1|1|C|1508
6DDD|1|1|G|1509
6DDD|1|1|U|1510
*
6DDD|1|1|G|1571
6DDD|1|1|G|1572
6DDD|1|1|A|1573
6DDD|1|1|G|1574
6DDD|1|1|A|1575
6DDD|1|1|A|1576
*
6DDD|1|1|U|1589
6DDD|1|1|C|1590
6DDD|1|1|G|1591
6DDD|1|1|A|1592
6DDD|1|1|G|1593
6DDD|1|1|U|1594

Current chains

Chain 1

23S rRNA

Nearby chains