J4_6DDD_008

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAG*CGAAAG

Length

23 nucleotides

Bulged bases

6DDD|1|1|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|C|1860
6DDD|1|1|U|1861
6DDD|1|1|G|1862
6DDD|1|1|C|1863
*
6DDD|1|1|G|1931
6DDD|1|1|C|1932
6DDD|1|1|G|1933
*
6DDD|1|1|C|1951
6DDD|1|1|C|1952
6DDD|1|1|U|1953
6DDD|1|1|A|1954
6DDD|1|1|A|1955
6DDD|1|1|G|1956
6DDD|1|1|G|1957
6DDD|1|1|U|1958
6DDD|1|1|A|1959
6DDD|1|1|G|1960
*
6DDD|1|1|C|1994
6DDD|1|1|G|1995
6DDD|1|1|A|1996
6DDD|1|1|A|1997
6DDD|1|1|A|1998
6DDD|1|1|G|1999

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2