J4_6DDG_002
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAU*AAUC*GAA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DDG_002 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.1082
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6DDG|1|1|C|340
6DDG|1|1|G|341
6DDG|1|1|A|342
6DDG|1|1|A|343
6DDG|1|1|U|344
*
6DDG|1|1|A|359
6DDG|1|1|A|360
6DDG|1|1|U|361
6DDG|1|1|C|362
*
6DDG|1|1|G|366
6DDG|1|1|A|367
6DDG|1|1|A|368
*
6DDG|1|1|U|380
6DDG|1|1|G|381
6DDG|1|1|U|382
6DDG|1|1|A|383
6DDG|1|1|G|384
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L24
- Chain S
- 50S ribosomal protein L4
Coloring options: