J4_6DDG_003
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGUAG*CGAG*CGUUUAG
- Length
- 20 nucleotides
- Bulged bases
- 6DDG|1|1|U|698, 6DDG|1|1|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DDG_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5442
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DDG|1|1|C|644
6DDG|1|1|A|645
6DDG|1|1|A|646
6DDG|1|1|G|647
*
6DDG|1|1|C|669
6DDG|1|1|G|670
6DDG|1|1|U|671
6DDG|1|1|A|672
6DDG|1|1|G|673
*
6DDG|1|1|C|680
6DDG|1|1|G|681
6DDG|1|1|A|682
6DDG|1|1|G|683
*
6DDG|1|1|C|695
6DDG|1|1|G|696
6DDG|1|1|U|697
6DDG|1|1|U|698
6DDG|1|1|U|699
6DDG|1|1|A|700
6DDG|1|1|G|701
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L35
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
Coloring options: