J4_6DDG_005

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6DDG|1|1|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|1|G|1347
6DDG|1|1|U|1348
6DDG|1|1|U|1349
6DDG|1|1|U|1350
6DDG|1|1|C|1351
*
6DDG|1|1|G|1375
6DDG|1|1|G|1376
6DDG|1|1|U|1377
6DDG|1|1|U|1378
6DDG|1|1|A|1379
6DDG|1|1|G|1380
*
6DDG|1|1|C|1441
6DDG|1|1|C|1442
*
6DDG|1|1|G|1641
6DDG|1|1|C|1642
6DDG|1|1|C|1643
6DDG|1|1|C|1644
6DDG|1|1|G|1645
6DDG|1|1|U|1646
6DDG|1|1|A|1647
6DDG|1|1|C|1648

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23

Chain P

50S ribosomal protein L34