J4_6DDG_008

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAG*CGAAAG

Length

23 nucleotides

Bulged bases

6DDG|1|1|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|1|C|1860
6DDG|1|1|U|1861
6DDG|1|1|G|1862
6DDG|1|1|C|1863
*
6DDG|1|1|G|1931
6DDG|1|1|C|1932
6DDG|1|1|G|1933
*
6DDG|1|1|C|1951
6DDG|1|1|C|1952
6DDG|1|1|U|1953
6DDG|1|1|A|1954
6DDG|1|1|A|1955
6DDG|1|1|G|1956
6DDG|1|1|G|1957
6DDG|1|1|U|1958
6DDG|1|1|A|1959
6DDG|1|1|G|1960
*
6DDG|1|1|C|1994
6DDG|1|1|G|1995
6DDG|1|1|A|1996
6DDG|1|1|A|1997
6DDG|1|1|A|1998
6DDG|1|1|G|1999

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2