J4_6DDG_011

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGCG*CACGU*GGAGAA*UCGAGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|1|A|1488
6DDG|1|1|A|1489
6DDG|1|1|G|1490
6DDG|1|1|C|1491
6DDG|1|1|G|1492
*
6DDG|1|1|C|1506
6DDG|1|1|A|1507
6DDG|1|1|C|1508
6DDG|1|1|G|1509
6DDG|1|1|U|1510
*
6DDG|1|1|G|1571
6DDG|1|1|G|1572
6DDG|1|1|A|1573
6DDG|1|1|G|1574
6DDG|1|1|A|1575
6DDG|1|1|A|1576
*
6DDG|1|1|U|1589
6DDG|1|1|C|1590
6DDG|1|1|G|1591
6DDG|1|1|A|1592
6DDG|1|1|G|1593
6DDG|1|1|U|1594

Current chains

Chain 1

23S rRNA

Nearby chains