J4_6DLR_001

3D structure

PDB id

6DLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.66 Å

Loop

Sequence

AGU*AG*UACAC*GGUAGGU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59845.1

Basepair signature

cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6DLR|1|A|A|5
6DLR|1|A|G|6
6DLR|1|A|U|7
*
6DLR|1|A|A|55
6DLR|1|A|G|56
*
6DLR|1|A|U|71
6DLR|1|A|A|72
6DLR|1|A|C|73
6DLR|1|A|A|74
6DLR|1|A|C|75
*
6DLR|1|A|G|98
6DLR|1|A|G|99
6DLR|1|A|U|100
6DLR|1|A|A|101
6DLR|1|A|G|102
6DLR|1|A|G|103
6DLR|1|A|U|104

Current chains

Chain A

PRPP Riboswitch

Nearby chains