J4_6DZI_008

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6DZI|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZI_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1451

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6DZI|1|A|C|2050
6DZI|1|A|U|2051
6DZI|1|A|G|2052
*
6DZI|1|A|C|2129
6DZI|1|A|G|2130
*
6DZI|1|A|C|2148
6DZI|1|A|C|2149
6DZI|1|A|U|2150
6DZI|1|A|A|2151
6DZI|1|A|A|2152
6DZI|1|A|G|2153
6DZI|1|A|G|2154
6DZI|1|A|U|2155
6DZI|1|A|A|2156
6DZI|1|A|G|2157
*
6DZI|1|A|C|2191
6DZI|1|A|G|2192
6DZI|1|A|A|2193
6DZI|1|A|A|2194
6DZI|1|A|U|2195
6DZI|1|A|G|2196

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain j

CONSERVED PROTEIN DOMAIN