J4_6DZI_012

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

6DZI|1|h|C|179, 6DZI|1|h|A|180, 6DZI|1|h|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|h|U|140
6DZI|1|h|U|141
*
6DZI|1|h|A|175
6DZI|1|h|A|176
6DZI|1|h|U|177
6DZI|1|h|A|178
6DZI|1|h|C|179
6DZI|1|h|A|180
6DZI|1|h|C|181
*
6DZI|1|h|G|207
6DZI|1|h|G|208
6DZI|1|h|A|209
6DZI|1|h|A|210
6DZI|1|h|A|211
6DZI|1|h|G|212
*
6DZI|1|h|C|219
6DZI|1|h|G|220

Current chains

Chain h

16S rRNA

Nearby chains

Chain 5

30S ribosomal protein S17

Chain 7

30S ribosomal protein S20