J4_6DZI_013
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CGUAAAGAG*CGAAAG*CCGUAAACGGUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 6DZI|1|h|A|552, 6DZI|1|h|A|556, 6DZI|1|h|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DZI|1|h|C|549
6DZI|1|h|G|550
6DZI|1|h|U|551
6DZI|1|h|A|552
6DZI|1|h|A|553
6DZI|1|h|A|554
6DZI|1|h|G|555
6DZI|1|h|A|556
6DZI|1|h|G|557
*
6DZI|1|h|C|744
6DZI|1|h|G|745
6DZI|1|h|A|746
6DZI|1|h|A|747
6DZI|1|h|A|748
6DZI|1|h|G|749
*
6DZI|1|h|C|790
6DZI|1|h|C|791
6DZI|1|h|G|792
6DZI|1|h|U|793
6DZI|1|h|A|794
6DZI|1|h|A|795
6DZI|1|h|A|796
6DZI|1|h|C|797
6DZI|1|h|G|798
6DZI|1|h|G|799
6DZI|1|h|U|800
6DZI|1|h|G|801
*
6DZI|1|h|C|861
6DZI|1|h|C|862
6DZI|1|h|G|863
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 5
- 30S ribosomal protein S17
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- CONSERVED PROTEIN DOMAIN
- Chain q
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S12
- Chain x
- 30S ribosomal protein S15
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