J4_6DZK_001

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

6DZK|1|A|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZK|1|A|G|111
6DZK|1|A|A|112
6DZK|1|A|G|113
6DZK|1|A|U|114
6DZK|1|A|A|115
6DZK|1|A|A|116
6DZK|1|A|C|117
6DZK|1|A|A|118
6DZK|1|A|C|119
*
6DZK|1|A|G|238
6DZK|1|A|G|239
6DZK|1|A|C|240
*
6DZK|1|A|G|286
6DZK|1|A|U|287
6DZK|1|A|A|288
6DZK|1|A|G|289
*
6DZK|1|A|C|311
6DZK|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17