J4_6DZK_002

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

6DZK|1|A|C|179, 6DZK|1|A|A|180, 6DZK|1|A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZK|1|A|U|140
6DZK|1|A|U|141
*
6DZK|1|A|A|175
6DZK|1|A|A|176
6DZK|1|A|U|177
6DZK|1|A|A|178
6DZK|1|A|C|179
6DZK|1|A|A|180
6DZK|1|A|C|181
*
6DZK|1|A|G|207
6DZK|1|A|G|208
6DZK|1|A|A|209
6DZK|1|A|A|210
6DZK|1|A|A|211
6DZK|1|A|G|212
*
6DZK|1|A|C|219
6DZK|1|A|G|220

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20