J4_6DZK_003
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUAAAGAG*CGAAAG*CCGUAAACGGUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 6DZK|1|A|A|552, 6DZK|1|A|A|556, 6DZK|1|A|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DZK|1|A|C|549
6DZK|1|A|G|550
6DZK|1|A|U|551
6DZK|1|A|A|552
6DZK|1|A|A|553
6DZK|1|A|A|554
6DZK|1|A|G|555
6DZK|1|A|A|556
6DZK|1|A|G|557
*
6DZK|1|A|C|744
6DZK|1|A|G|745
6DZK|1|A|A|746
6DZK|1|A|A|747
6DZK|1|A|A|748
6DZK|1|A|G|749
*
6DZK|1|A|C|790
6DZK|1|A|C|791
6DZK|1|A|G|792
6DZK|1|A|U|793
6DZK|1|A|A|794
6DZK|1|A|A|795
6DZK|1|A|A|796
6DZK|1|A|C|797
6DZK|1|A|G|798
6DZK|1|A|G|799
6DZK|1|A|U|800
6DZK|1|A|G|801
*
6DZK|1|A|C|861
6DZK|1|A|C|862
6DZK|1|A|G|863
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Conserved domain protein
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: