J4_6DZP_001

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

6DZP|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|C|269
6DZP|1|A|U|270
6DZP|1|A|A|271
6DZP|1|A|A|272
6DZP|1|A|A|273
6DZP|1|A|C|274
*
6DZP|1|A|G|312
6DZP|1|A|G|313
6DZP|1|A|G|314
6DZP|1|A|U|315
6DZP|1|A|U|316
6DZP|1|A|G|317
*
6DZP|1|A|C|492
6DZP|1|A|U|493
6DZP|1|A|G|494
*
6DZP|1|A|U|509
6DZP|1|A|A|510
6DZP|1|A|A|511
6DZP|1|A|G|512

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28