J4_6DZP_002
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GGAAA*UGCC*GAC*GGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DZP_002 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.1272
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6DZP|1|A|G|378
6DZP|1|A|G|379
6DZP|1|A|A|380
6DZP|1|A|A|381
6DZP|1|A|A|382
*
6DZP|1|A|U|398
6DZP|1|A|G|399
6DZP|1|A|C|400
6DZP|1|A|C|401
*
6DZP|1|A|G|405
6DZP|1|A|A|406
6DZP|1|A|C|407
*
6DZP|1|A|G|419
6DZP|1|A|G|420
6DZP|1|A|U|421
6DZP|1|A|A|422
6DZP|1|A|C|423
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L24
Coloring options: