J4_6DZP_005

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UC*GGUGAGU*ACC*GCCCGUA

Length

19 nucleotides

Bulged bases

6DZP|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|U|1428
6DZP|1|A|C|1429
*
6DZP|1|A|G|1453
6DZP|1|A|G|1454
6DZP|1|A|U|1455
6DZP|1|A|G|1456
6DZP|1|A|A|1457
6DZP|1|A|G|1458
6DZP|1|A|U|1459
*
6DZP|1|A|A|1518
6DZP|1|A|C|1519
6DZP|1|A|C|1520
*
6DZP|1|A|G|1815
6DZP|1|A|C|1816
6DZP|1|A|C|1817
6DZP|1|A|C|1818
6DZP|1|A|G|1819
6DZP|1|A|U|1820
6DZP|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23