J4_6DZP_008

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6DZP|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZP_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1451

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6DZP|1|A|C|2050
6DZP|1|A|U|2051
6DZP|1|A|G|2052
*
6DZP|1|A|C|2129
6DZP|1|A|G|2130
*
6DZP|1|A|C|2148
6DZP|1|A|C|2149
6DZP|1|A|U|2150
6DZP|1|A|A|2151
6DZP|1|A|A|2152
6DZP|1|A|G|2153
6DZP|1|A|G|2154
6DZP|1|A|U|2155
6DZP|1|A|A|2156
6DZP|1|A|G|2157
*
6DZP|1|A|C|2191
6DZP|1|A|G|2192
6DZP|1|A|A|2193
6DZP|1|A|A|2194
6DZP|1|A|U|2195
6DZP|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2