J4_6DZP_010

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AAACC*GAC*GGACA*UCUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|A|2866
6DZP|1|A|A|2867
6DZP|1|A|A|2868
6DZP|1|A|C|2869
6DZP|1|A|C|2870
*
6DZP|1|A|G|2898
6DZP|1|A|A|2899
6DZP|1|A|C|2900
*
6DZP|1|A|G|2955
6DZP|1|A|G|2956
6DZP|1|A|A|2957
6DZP|1|A|C|2958
6DZP|1|A|A|2959
*
6DZP|1|A|U|2993
6DZP|1|A|C|2994
6DZP|1|A|U|2995
6DZP|1|A|U|2996

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14