J4_6EM1_002

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAG*UUC*GC*GCAGAUC

Length

16 nucleotides

Bulged bases

6EM1|1|1|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EM1|1|1|G|658
6EM1|1|1|G|659
6EM1|1|1|A|660
6EM1|1|1|G|661
*
6EM1|1|1|U|942
6EM1|1|1|U|943
6EM1|1|1|C|944
*
6EM1|1|1|G|1375
6EM1|1|1|C|1376
*
6EM1|1|1|G|1431
6EM1|1|1|C|1432
6EM1|1|1|A|1433
6EM1|1|1|G|1434
6EM1|1|1|A|1435
6EM1|1|1|U|1436
6EM1|1|1|C|1437

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain e

60S ribosomal protein L32