J4_6ENJ_020
3D structure
- PDB id
- 6ENJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 6ENJ|1|x|U|8, 6ENJ|1|x|U|47, 6ENJ|1|x|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ENJ_020 not in the Motif Atlas
- Homologous match to J4_1H4S_001
- Geometric discrepancy: 0.2339
- The information below is about J4_1H4S_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6ENJ|1|x|U|7
6ENJ|1|x|U|8
6ENJ|1|x|G|9
6ENJ|1|x|G|10
*
6ENJ|1|x|C|25
6ENJ|1|x|A|26
6ENJ|1|x|C|27
*
6ENJ|1|x|G|43
6ENJ|1|x|G|44
6ENJ|1|x|G|45
6ENJ|1|x|G|46
6ENJ|1|x|U|47
6ENJ|1|x|C|48
6ENJ|1|x|G|49
*
6ENJ|1|x|U|65
6ENJ|1|x|A|66
Current chains
- Chain x
- Proline tRNA
Nearby chains
- Chain 9
- Transfer RNA; tRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain m
- 30S ribosomal protein S13
- Chain w
- Elongation factor P
Coloring options: