J4_6FKR_015

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_015 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0694

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6FKR|1|2A|C|297
6FKR|1|2A|G|298
6FKR|1|2A|A|299
6FKR|1|2A|A|300
6FKR|1|2A|G|301
*
6FKR|1|2A|C|316
6FKR|1|2A|G|317
6FKR|1|2A|C|318
6FKR|1|2A|C|319
*
6FKR|1|2A|G|323
6FKR|1|2A|A|324
6FKR|1|2A|G|325
*
6FKR|1|2A|C|337
6FKR|1|2A|G|338
6FKR|1|2A|U|339
6FKR|1|2A|A|340
6FKR|1|2A|G|341

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24