J4_6FKR_017

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6FKR|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_017 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0606

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6FKR|1|2A|G|1310
6FKR|1|2A|G|1311
6FKR|1|2A|U|1312
6FKR|1|2A|U|1313
6FKR|1|2A|C|1314
*
6FKR|1|2A|G|1338
6FKR|1|2A|G|1339
6FKR|1|2A|U|1340
6FKR|1|2A|U|1341
6FKR|1|2A|A|1342
6FKR|1|2A|G|1343
*
6FKR|1|2A|C|1404
6FKR|1|2A|U|1405
*
6FKR|1|2A|A|1597
6FKR|1|2A|C|1598
6FKR|1|2A|C|1599
6FKR|1|2A|C|1600
6FKR|1|2A|G|1601
6FKR|1|2A|U|1602
6FKR|1|2A|A|1603
6FKR|1|2A|C|1604

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23