J4_6FKR_021

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6FKR|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_021 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0692

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6FKR|1|2A|U|1833
6FKR|1|2A|U|1834
6FKR|1|2A|G|1835
*
6FKR|1|2A|C|1905
6FKR|1|2A|G|1906
*
6FKR|1|2A|C|1924
6FKR|1|2A|C|1925
6FKR|1|2A|U|1926
6FKR|1|2A|A|1927
6FKR|1|2A|A|1928
6FKR|1|2A|G|1929
6FKR|1|2A|G|1930
6FKR|1|2A|U|1931
6FKR|1|2A|A|1932
6FKR|1|2A|G|1933
*
6FKR|1|2A|C|1967
6FKR|1|2A|G|1968
6FKR|1|2A|A|1969
6FKR|1|2A|A|1970
6FKR|1|2A|A|1971
6FKR|1|2A|A|1972

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA