J4_6FTI_001

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAG*CGU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

6FTI|1|q|U|8, 6FTI|1|q|U|47, 6FTI|1|q|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FTI_001 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.1827

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6FTI|1|q|G|7
6FTI|1|q|U|8
6FTI|1|q|A|9
6FTI|1|q|G|10
*
6FTI|1|q|C|25
6FTI|1|q|G|26
6FTI|1|q|U|27
*
6FTI|1|q|A|43
6FTI|1|q|A|44
6FTI|1|q|G|45
6FTI|1|q|G|46
6FTI|1|q|U|47
6FTI|1|q|C|48
6FTI|1|q|C|49
*
6FTI|1|q|G|65
6FTI|1|q|C|66

Current chains

Chain q

p-Site tRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain u

Large subunit ribosomal RNA; LSU rRNA