J4_6FTJ_004

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6FTJ|1|u|A|2366, 6FTJ|1|u|U|2369, 6FTJ|1|u|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTJ|1|u|C|2365
6FTJ|1|u|A|2366
6FTJ|1|u|A|2367
6FTJ|1|u|A|2368
6FTJ|1|u|U|2369
6FTJ|1|u|A|2370
6FTJ|1|u|U|2371
*
6FTJ|1|u|A|2389
6FTJ|1|u|G|2390
6FTJ|1|u|G|2391
*
6FTJ|1|u|C|2824
6FTJ|1|u|A|2825
6FTJ|1|u|U|2826
6FTJ|1|u|G|2827
6FTJ|1|u|U|2828
6FTJ|1|u|U|2829
*
6FTJ|1|u|A|3856
6FTJ|1|u|G|3857

Current chains

Chain u

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31