J4_6GAW_003
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CGAUAG*CCCUAAACCCAA*UC
- Length
- 23 nucleotides
- Bulged bases
- 6GAW|1|AA|A|297, 6GAW|1|AA|A|455, 6GAW|1|AA|C|458, 6GAW|1|AA|A|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GAW_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1887
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GAW|1|AA|G|296
6GAW|1|AA|A|297
6GAW|1|AA|G|298
*
6GAW|1|AA|C|404
6GAW|1|AA|G|405
6GAW|1|AA|A|406
6GAW|1|AA|U|407
6GAW|1|AA|A|408
6GAW|1|AA|G|409
*
6GAW|1|AA|C|450
6GAW|1|AA|C|451
6GAW|1|AA|C|452
6GAW|1|AA|U|453
6GAW|1|AA|A|454
6GAW|1|AA|A|455
6GAW|1|AA|A|456
6GAW|1|AA|C|457
6GAW|1|AA|C|458
6GAW|1|AA|C|459
6GAW|1|AA|A|460
6GAW|1|AA|A|461
*
6GAW|1|AA|U|483
6GAW|1|AA|C|484
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AO
- Uncharacterized protein
- Chain AQ
- uS17m
- Chain AU
- bS21m
- Chain Ac
- Mitochondrial ribosomal protein S25
- Chain Am
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain An
- Aurora kinase A interacting protein 1
Coloring options: