J4_6GAW_005

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

6GAW|1|BA|A|650, 6GAW|1|BA|A|783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|C|648
6GAW|1|BA|A|649
6GAW|1|BA|A|650
6GAW|1|BA|G|651
*
6GAW|1|BA|C|660
6GAW|1|BA|U|661
*
6GAW|1|BA|A|781
6GAW|1|BA|A|782
6GAW|1|BA|A|783
6GAW|1|BA|G|784
*
6GAW|1|BA|C|1003
6GAW|1|BA|A|1004
6GAW|1|BA|G|1005

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

bL32m

Chain BR

39S ribosomal protein L17, mitochondrial

Chain BW

uL22m

Chain Bw

mL65