J4_6GAW_006

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACGCUUACA*UAAUUAAC*GUUAACC*GAG

Length

28 nucleotides

Bulged bases

6GAW|1|BA|U|705, 6GAW|1|BA|A|707, 6GAW|1|BA|A|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|C|669
6GAW|1|BA|A|670
6GAW|1|BA|C|671
6GAW|1|BA|G|672
6GAW|1|BA|C|673
6GAW|1|BA|U|674
6GAW|1|BA|U|675
6GAW|1|BA|A|676
6GAW|1|BA|C|677
6GAW|1|BA|A|678
*
6GAW|1|BA|U|701
6GAW|1|BA|A|702
6GAW|1|BA|A|703
6GAW|1|BA|U|704
6GAW|1|BA|U|705
6GAW|1|BA|A|706
6GAW|1|BA|A|707
6GAW|1|BA|C|708
*
6GAW|1|BA|G|753
6GAW|1|BA|U|754
6GAW|1|BA|U|755
6GAW|1|BA|A|756
6GAW|1|BA|A|757
6GAW|1|BA|C|758
6GAW|1|BA|C|759
*
6GAW|1|BA|G|768
6GAW|1|BA|A|769
6GAW|1|BA|G|770

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B2

Mitochondrial ribosomal protein L47

Chain B7

Mitochondrial ribosomal protein L34

Chain BX

uL23m

Chain Be

Mitochondrial ribosomal protein L41

Chain Bw

mL65