J4_6GAW_007

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|G|824
6GAW|1|BA|C|825
6GAW|1|BA|C|826
6GAW|1|BA|U|827
6GAW|1|BA|G|828
*
6GAW|1|BA|C|840
6GAW|1|BA|A|841
6GAW|1|BA|U|842
6GAW|1|BA|C|843
6GAW|1|BA|A|844
6GAW|1|BA|C|845
*
6GAW|1|BA|G|869
6GAW|1|BA|C|870
6GAW|1|BA|A|871
6GAW|1|BA|A|872
6GAW|1|BA|U|873
6GAW|1|BA|G|874
*
6GAW|1|BA|C|969
6GAW|1|BA|C|970
6GAW|1|BA|A|971
6GAW|1|BA|C|972
6GAW|1|BA|A|973
6GAW|1|BA|C|974

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

Aurora kinase A interacting protein 1

Chain BD

39S ribosomal protein L2, mitochondrial