J4_6GAW_010

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAG*CAA*UAGAUG*CC

Length

15 nucleotides

Bulged bases

6GAW|1|BB|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GAW_010 not in the Motif Atlas

Homologous match to J4_5HR7_002

Geometric discrepancy: 0.4502

The information below is about J4_5HR7_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6GAW|1|BB|G|7
6GAW|1|BB|U|8
6GAW|1|BB|A|9
6GAW|1|BB|G|10
*
6GAW|1|BB|C|26
6GAW|1|BB|A|27
6GAW|1|BB|A|28
*
6GAW|1|BB|U|44
6GAW|1|BB|A|45
6GAW|1|BB|G|46
6GAW|1|BB|A|47
6GAW|1|BB|U|48
6GAW|1|BB|G|49
*
6GAW|1|BB|C|62
6GAW|1|BB|C|63

Current chains

Chain BB

tRNA-Phe, mitochondrial

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain BS

Mitochondrial ribosomal protein L18

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bd

39S ribosomal protein L40, mitochondrial isoform 1

Chain Bk

Mitochondrial ribosomal protein L48