J4_6GAZ_002

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGAAUG*CAG*CUUG*CC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAZ|1|AA|G|71
6GAZ|1|AA|A|72
6GAZ|1|AA|G|73
6GAZ|1|AA|A|74
6GAZ|1|AA|A|75
6GAZ|1|AA|U|76
6GAZ|1|AA|G|77
*
6GAZ|1|AA|C|106
6GAZ|1|AA|A|107
6GAZ|1|AA|G|108
*
6GAZ|1|AA|C|144
6GAZ|1|AA|U|145
6GAZ|1|AA|U|146
6GAZ|1|AA|G|147
*
6GAZ|1|AA|C|153
6GAZ|1|AA|C|154

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AP

bS16m, MRPS16

Chain AQ

Mitochondrial ribosomal protein S17

Chain Aj

Mitochondrial ribosomal protein S34