J4_6GAZ_003
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CGAUAG*CCCUAAACCCAA*UC
- Length
- 23 nucleotides
- Bulged bases
- 6GAZ|1|AA|A|297, 6GAZ|1|AA|A|455, 6GAZ|1|AA|C|458, 6GAZ|1|AA|A|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GAZ_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1867
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GAZ|1|AA|G|296
6GAZ|1|AA|A|297
6GAZ|1|AA|G|298
*
6GAZ|1|AA|C|404
6GAZ|1|AA|G|405
6GAZ|1|AA|A|406
6GAZ|1|AA|U|407
6GAZ|1|AA|A|408
6GAZ|1|AA|G|409
*
6GAZ|1|AA|C|450
6GAZ|1|AA|C|451
6GAZ|1|AA|C|452
6GAZ|1|AA|U|453
6GAZ|1|AA|A|454
6GAZ|1|AA|A|455
6GAZ|1|AA|A|456
6GAZ|1|AA|C|457
6GAZ|1|AA|C|458
6GAZ|1|AA|C|459
6GAZ|1|AA|A|460
6GAZ|1|AA|A|461
*
6GAZ|1|AA|U|483
6GAZ|1|AA|C|484
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AO
- Mitochondrial ribosomal protein S15
- Chain AQ
- Mitochondrial ribosomal protein S17
- Chain AU
- Mitochondrial ribosomal protein S21
- Chain Ac
- Mitochondrial ribosomal protein S25
- Chain Am
- Mitochondrial ribosomal protein S37
- Chain An
- Aurora kinase A interacting protein 1
Coloring options: