J4_6GBZ_002

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GBZ_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0847

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6GBZ|1|A|G|297
6GBZ|1|A|G|298
6GBZ|1|A|A|299
6GBZ|1|A|A|300
6GBZ|1|A|G|301
*
6GBZ|1|A|C|316
6GBZ|1|A|G|317
6GBZ|1|A|C|318
6GBZ|1|A|G|319
*
6GBZ|1|A|C|323
6GBZ|1|A|A|324
6GBZ|1|A|G|325
*
6GBZ|1|A|C|337
6GBZ|1|A|G|338
6GBZ|1|A|U|339
6GBZ|1|A|A|340
6GBZ|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24