J4_6GBZ_003

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6GBZ|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GBZ_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1151

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6GBZ|1|A|C|601
6GBZ|1|A|A|602
6GBZ|1|A|A|603
6GBZ|1|A|G|604
*
6GBZ|1|A|C|624
6GBZ|1|A|G|625
6GBZ|1|A|A|626
6GBZ|1|A|A|627
6GBZ|1|A|G|628
*
6GBZ|1|A|C|635
6GBZ|1|A|G|636
6GBZ|1|A|A|637
6GBZ|1|A|G|638
*
6GBZ|1|A|C|650
6GBZ|1|A|G|651
6GBZ|1|A|U|652
6GBZ|1|A|U|653
6GBZ|1|A|A|654
6GBZ|1|A|A|655
6GBZ|1|A|G|656

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15