J4_6GBZ_009

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6GBZ|1|A|C|1925, 6GBZ|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GBZ_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4109

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6GBZ|1|A|C|1833
6GBZ|1|A|U|1834
6GBZ|1|A|G|1835
*
6GBZ|1|A|C|1905
6GBZ|1|A|G|1906
*
6GBZ|1|A|C|1924
6GBZ|1|A|C|1925
6GBZ|1|A|U|1926
6GBZ|1|A|A|1927
6GBZ|1|A|A|1928
6GBZ|1|A|G|1929
6GBZ|1|A|G|1930
6GBZ|1|A|U|1931
6GBZ|1|A|A|1932
6GBZ|1|A|G|1933
*
6GBZ|1|A|C|1967
6GBZ|1|A|G|1968
6GBZ|1|A|A|1969
6GBZ|1|A|A|1970
6GBZ|1|A|U|1971
6GBZ|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2