J4_6GC4_002

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC4_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1341

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6GC4|1|A|G|297
6GC4|1|A|G|298
6GC4|1|A|A|299
6GC4|1|A|A|300
6GC4|1|A|G|301
*
6GC4|1|A|C|316
6GC4|1|A|G|317
6GC4|1|A|C|318
6GC4|1|A|G|319
*
6GC4|1|A|C|323
6GC4|1|A|A|324
6GC4|1|A|G|325
*
6GC4|1|A|C|337
6GC4|1|A|G|338
6GC4|1|A|U|339
6GC4|1|A|A|340
6GC4|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24