3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6GC4_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.1341
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6GC4|1|A|G|297
6GC4|1|A|G|298
6GC4|1|A|A|299
6GC4|1|A|A|300
6GC4|1|A|G|301
*
6GC4|1|A|C|316
6GC4|1|A|G|317
6GC4|1|A|C|318
6GC4|1|A|G|319
*
6GC4|1|A|C|323
6GC4|1|A|A|324
6GC4|1|A|G|325
*
6GC4|1|A|C|337
6GC4|1|A|G|338
6GC4|1|A|U|339
6GC4|1|A|A|340
6GC4|1|A|C|341

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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