J4_6GC4_014

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6GC4|1|A|C|1925, 6GC4|1|A|U|1926, 6GC4|1|A|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC4_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.5102

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6GC4|1|A|C|1833
6GC4|1|A|U|1834
6GC4|1|A|G|1835
*
6GC4|1|A|C|1905
6GC4|1|A|G|1906
*
6GC4|1|A|C|1924
6GC4|1|A|C|1925
6GC4|1|A|U|1926
6GC4|1|A|A|1927
6GC4|1|A|A|1928
6GC4|1|A|G|1929
6GC4|1|A|G|1930
6GC4|1|A|U|1931
6GC4|1|A|A|1932
6GC4|1|A|G|1933
*
6GC4|1|A|C|1967
6GC4|1|A|G|1968
6GC4|1|A|A|1969
6GC4|1|A|A|1970
6GC4|1|A|U|1971
6GC4|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2