J4_6GC6_004

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC6_004 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1556

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6GC6|1|A|G|297
6GC6|1|A|G|298
6GC6|1|A|A|299
6GC6|1|A|A|300
6GC6|1|A|G|301
*
6GC6|1|A|C|316
6GC6|1|A|G|317
6GC6|1|A|C|318
6GC6|1|A|G|319
*
6GC6|1|A|C|323
6GC6|1|A|A|324
6GC6|1|A|G|325
*
6GC6|1|A|C|337
6GC6|1|A|G|338
6GC6|1|A|U|339
6GC6|1|A|A|340
6GC6|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24