J4_6GC6_005

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6GC6|1|A|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC6_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3861

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6GC6|1|A|C|601
6GC6|1|A|A|602
6GC6|1|A|A|603
6GC6|1|A|G|604
*
6GC6|1|A|C|624
6GC6|1|A|G|625
6GC6|1|A|A|626
6GC6|1|A|A|627
6GC6|1|A|G|628
*
6GC6|1|A|C|635
6GC6|1|A|G|636
6GC6|1|A|A|637
6GC6|1|A|G|638
*
6GC6|1|A|C|650
6GC6|1|A|G|651
6GC6|1|A|U|652
6GC6|1|A|U|653
6GC6|1|A|A|654
6GC6|1|A|A|655
6GC6|1|A|G|656

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15