J4_6GC6_007

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6GC6|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC6_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.133

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|G|1310
6GC6|1|A|G|1311
6GC6|1|A|U|1312
6GC6|1|A|U|1313
6GC6|1|A|C|1314
*
6GC6|1|A|G|1338
6GC6|1|A|G|1339
6GC6|1|A|U|1340
6GC6|1|A|G|1341
6GC6|1|A|A|1342
6GC6|1|A|G|1343
*
6GC6|1|A|C|1404
6GC6|1|A|U|1405
*
6GC6|1|A|A|1597
6GC6|1|A|A|1598
6GC6|1|A|U|1599
6GC6|1|A|C|1600
6GC6|1|A|G|1601
6GC6|1|A|U|1602
6GC6|1|A|A|1603
6GC6|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23