J4_6GC6_010

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCAACUG*CACAG*UGAC*GUAAUGAU

Length

24 nucleotides

Bulged bases

6GC6|1|A|A|1981

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC6|1|A|G|1770
6GC6|1|A|C|1771
6GC6|1|A|A|1772
6GC6|1|A|A|1773
6GC6|1|A|C|1774
6GC6|1|A|U|1775
6GC6|1|A|G|1776
*
6GC6|1|A|C|1788
6GC6|1|A|A|1789
6GC6|1|A|C|1790
6GC6|1|A|A|1791
6GC6|1|A|G|1792
*
6GC6|1|A|U|1827
6GC6|1|A|G|1828
6GC6|1|A|A|1829
6GC6|1|A|C|1830
*
6GC6|1|A|G|1975
6GC6|1|A|U|1976
6GC6|1|A|A|1977
6GC6|1|A|A|1978
6GC6|1|A|U|1979
6GC6|1|A|G|1980
6GC6|1|A|A|1981
6GC6|1|A|U|1982

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2